Hey Gillman,
My boat was doing something similar. When I had it opened up, or even when I was just taking off, it seemed the motor would lose about 1,000 rpms and would take a long time to get to plane. If I was on plane, it would just rev down, and I'd lose some speed, but then for no reason it would just fire right back up.
Just an FYI, I have a 2002 Opti max (225).
I had it down to Jet-a-Marina for repair. It took them a while to find the problem, but they got it fixed and it runs great now. They said it was a "module" that controled something to do with the rev/fuel, and they also had to replace some type of plug. They also went ahead and changed all my plugs, but they did that first, and it had no real affect.
Sorry I am not more technical, or mechanical I guess, and I can't be more specific. The fix was about $500, but definately worth it. It was sure nice to have full power back on the water.
Good luck,
HDF




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