I can tell you that I've bought lures new and now many are beat to heck.
they are scratched, gouged, marked etc. and they still catch fish.
A few marks aren't going to make a big difference. Besides, the Green Mamas your looking for (or Brown depending) are gonna grab it and taste it if they're in a eating mood. It's a rare occasion when they critique a few stray colors or marks imho.



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If placing a mark on the bait somehow helps you do determine the depth the plug runs, go for it. 